STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gutBSorbitol dehydrogenase. (357 aa)    
Predicted Functional Partners:
gltD_5
Glutamate synthase [NADPH] small chain.
 
     0.771
pyrK_6
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
  
 0.758
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.750
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.750
acoR_2
Acetoin dehydrogenase operon transcriptional activator AcoR.
 
  
 0.716
gatC_2
Galactitol permease IIC component.
  
 0.600
tarI
Putative ribitol-5-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
  
  
 0.535
pphA
Phosphonopyruvate hydrolase.
  
  
 0.505
AQS02313.1
Glycosyl transferases group 1.
  
 
 0.502
lgrD_2
Linear gramicidin synthase subunit D.
  
  
 0.487
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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