Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQS02222.1Peptidase family S41. (415 aa)    
Predicted Functional Partners:
AQR98334.1
Hypothetical protein.
 
 
 0.642
AQR98485.1
Tetratricopeptide repeat protein.
 
 
 0.624
AQS02224.1
ABC-2 family transporter protein.
 
     0.600
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.589
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.589
acoR_2
Acetoin dehydrogenase operon transcriptional activator AcoR.
 
     0.583
AQS02241.1
Hypothetical protein.
  
    0.564
AQS00956.1
Tetratricopeptide repeat protein.
 
 
 0.563
bepA
Beta-barrel assembly-enhancing protease.
 
 
 
 0.562
AQR98393.1
Hypothetical protein.
 
   
 0.559
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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