STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_6Tyrosine recombinase XerD. (199 aa)    
Predicted Functional Partners:
xerD_4
Tyrosine recombinase XerD.
  
     0.754
xerD_5
Tyrosine recombinase XerD.
  
     0.742
soj
Sporulation initiation inhibitor protein Soj.
 
   
 0.515
cobB_1
Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
      
 0.512
dosP
Oxygen sensor protein DosP.
       0.499
AQS02222.1
Peptidase family S41.
 
 
   0.470
ilvC_2
Ketol-acid reductoisomerase.
  
    0.434
AQR98731.1
DNA utilization protein GntX.
   
    0.426
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.412
spoIIIE
DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.
 
   
 0.405
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.