STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erpAIron-sulfur cluster insertion protein ErpA. (110 aa)    
Predicted Functional Partners:
AQS02241.1
Hypothetical protein.
 
     0.787
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
  
  
 0.766
AQS01198.1
Hypothetical protein.
  
  
 0.766
AQR98673.1
Endodeoxyribonuclease RusA.
  
     0.765
AQS02168.1
Helix-turn-helix domain protein.
  
    0.757
AQR99416.1
Tetratricopeptide repeat protein.
  
 
   0.734
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.724
AQS02169.1
Anaerobic benzoate catabolism transcriptional regulator.
  
    0.713
AQS02172.1
Hypothetical protein.
 
     0.712
AQS02325.1
Hypothetical protein.
  
 
 
 0.712
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.