Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQS02263.1Divergent AAA domain protein. (382 aa)    
Predicted Functional Partners:
cotI_3
Spore coat protein I.
  
     0.699
cotI_1
Spore coat protein I.
  
     0.683
cotI_4
Spore coat protein I.
  
     0.657
ycdT_2
Putative diguanylate cyclase YcdT.
       0.621
cotI_2
Spore coat protein I.
  
     0.606
AQS01978.1
Hypothetical protein.
 
     0.562
AQS00416.1
Ribosomal-protein-alanine N-acetyltransferase.
  
     0.473
AQS00454.1
Coat F domain protein.
  
     0.457
AQS02467.1
Hypothetical protein.
  
     0.434
AQS00406.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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