STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsJ_2Putative glycosyltransferase EpsJ. (349 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.701
AQR99416.1
Tetratricopeptide repeat protein.
 
 
 0.671
sunS_2
SPBc2 prophage-derived glycosyltransferase SunS.
  
 
 0.660
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.634
AQS02313.1
Glycosyl transferases group 1.
  
 
 0.632
AQS00274.1
UvrD/REP helicase.
  
 
 0.623
AQS00337.1
Tetratricopeptide repeat protein.
  
 
 0.615
AQR98479.1
Tetratricopeptide repeat protein.
  
 
 0.614
bepA
Beta-barrel assembly-enhancing protease.
  
 
 0.614
yrrB
TPR repeat-containing protein YrrB.
  
 
 0.614
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.