STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsI_2Bifunctional IPC transferase and DIPP synthase. (232 aa)    
Predicted Functional Partners:
LicA
Choline/ethanolamine kinase.
   
0.742
LicD
LicD family protein.
 
   
 0.683
lytB_3
Putative endo-beta-N-acetylglucosaminidase precursor.
 
    0.650
toxB_1
Toxin B.
  
    0.645
lytA_13
Autolysin.
  
    0.625
lytA_18
Autolysin.
  
    0.624
lytA_4
Autolysin.
  
    0.621
lytA_1
Autolysin.
  
    0.618
lytA_7
Autolysin.
  
    0.607
lytA_22
Autolysin.
  
    0.598
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.