Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
toxA_5Toxin A. (668 aa)    
Predicted Functional Partners:
spoVD_1
Stage V sporulation protein D.
  
     0.585
AQS00974.1
Bacterial dynamin-like protein.
  
     0.572
AQS02325.1
Hypothetical protein.
 
     0.569
lacE_1
Lactose-binding protein precursor.
  
     0.568
AQS02053.1
Hypothetical protein.
  
     0.567
AQS00977.1
Bacterial dynamin-like protein.
  
     0.559
AQS00934.1
HIRAN domain protein.
  
     0.556
acm_2
Lysozyme M1 precursor.
  
   
 0.528
AQR99421.1
O-antigen ligase.
  
     0.527
acm_1
Lysozyme M1 precursor.
  
   
 0.515
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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