STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arnB_2UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase. (367 aa)    
Predicted Functional Partners:
AQS02313.1
Glycosyl transferases group 1.
  
  
 0.924
btrR
L-glutamine:2-deoxy-scyllo-inosose aminotransferase.
  
  
 
0.917
rffG
dTDP-glucose 4,6-dehydratase 2.
 
  
 0.904
lpxD
UDP-3-O-acylglucosamine N-acyltransferase.
 
 
 0.820
AQS02310.1
Hypothetical protein.
   
   0.802
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.795
wbpA_1
UDP-N-acetyl-D-glucosamine 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.689
pseB
UDP-N-acetylglucosamine 4,6-dehydratase.
 
  
 0.680
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
 
  
 0.620
ligC
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
 
  
 0.604
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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