Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQS02315.1Hypothetical protein. (320 aa)    
Predicted Functional Partners:
yocH_2
Cell wall-binding protein YocH precursor.
   
  
 0.538
AQR99705.1
Bacterial SH3 domain protein.
   
  
 0.507
AQR98739.1
CAAX amino terminal protease self- immunity.
    
 
 0.487
AQS00037.1
CAAX amino terminal protease self- immunity.
    
 
 0.487
AQS00203.1
CAAX amino terminal protease self- immunity.
    
 
 0.487
AQS02423.1
CAAX amino terminal protease self- immunity.
    
 
 0.487
yocH_1
Cell wall-binding protein YocH precursor.
   
  
 0.471
AQR99706.1
Hypothetical protein.
   
  
 0.471
AQS02314.1
Hypothetical protein.
       0.420
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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