Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lytA_20Autolysin. (542 aa)    
Predicted Functional Partners:
LicA
Choline/ethanolamine kinase.
  
     0.696
toxA_6
Toxin A.
 
    
0.571
AQS01581.1
Hypothetical protein.
  
     0.564
toxB_6
Toxin B.
 
    
0.521
LicB1
EamA-like transporter family protein.
  
     0.509
spsI_2
Bifunctional IPC transferase and DIPP synthase.
  
    0.492
lytA_19
Autolysin.
 
   
0.477
LicB2
EamA-like transporter family protein.
  
     0.467
spsI_1
Bifunctional IPC transferase and DIPP synthase.
  
     0.464
AQS00934.1
HIRAN domain protein.
  
     0.422
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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