STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbX_2Putative O-antigen transporter. (478 aa)    
Predicted Functional Partners:
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.828
rmlA_2
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.755
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.754
wecA_2
UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase.
 
  
 0.730
AQS02313.1
Glycosyl transferases group 1.
  
  
 0.697
wecA_1
UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase.
 
  
 0.675
AQS02372.1
Hypothetical protein.
  
  
 0.664
AQS01491.1
Polysaccharide biosynthesis protein.
  
     0.662
rfbB_2
dTDP-glucose 4,6-dehydratase.
  
  
 0.654
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.652
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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