Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ywqETyrosine-protein phosphatase YwqE. (255 aa)    
Predicted Functional Partners:
cap8A_2
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
 
 0.991
ywqD_2
Tyrosine-protein kinase YwqD.
  
 0.976
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
 
 0.967
ywqD_1
Tyrosine-protein kinase YwqD.
  
 0.924
AQS01028.1
Hypothetical protein.
  
 
 0.628
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.548
rsbT_1
Serine/threonine-protein kinase RsbT.
    
   0.508
lytR_3
Transcriptional regulator LytR.
  
  
 0.503
AQS02488.1
VanZ like family protein.
 
     0.470
wecA_2
UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase.
 
  
 0.455
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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