STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytB_3Putative endo-beta-N-acetylglucosaminidase precursor. (324 aa)    
Predicted Functional Partners:
LicA
Choline/ethanolamine kinase.
 
     0.778
toxB_1
Toxin B.
 
   
 0.777
toxB_3
Toxin B.
 
   
 0.777
lytA_6
Autolysin.
  
     0.768
AQS01138.1
Putative cell wall binding repeat protein.
 
   
 0.742
yocH_2
Cell wall-binding protein YocH precursor.
  
  
 0.671
AQS01581.1
Hypothetical protein.
 
   
 0.664
spsI_2
Bifunctional IPC transferase and DIPP synthase.
 
    0.660
AQR99705.1
Bacterial SH3 domain protein.
 
  
 0.625
AQR98739.1
CAAX amino terminal protease self- immunity.
  
   0.603
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.