STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
toxA_7Toxin A. (609 aa)    
Predicted Functional Partners:
AQS00934.1
HIRAN domain protein.
  
     0.487
AQR99603.1
Pheromone autoinducer 2 transporter.
  
     0.467
AQS02325.1
Hypothetical protein.
 
    0.444
mcpC_6
Methyl-accepting chemotaxis protein McpC.
       0.444
PilM
Competence protein A.
  
   
 0.435
AQS02053.1
Hypothetical protein.
  
     0.428
AQS00546.1
Hypothetical protein.
  
     0.425
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
  
 0.423
epr_1
Minor extracellular protease Epr precursor.
 
     0.409
AQR99259.1
ComEC family competence protein.
 
   
 0.407
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.