STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fhaBFHA domain-containing protein FhaB. (147 aa)    
Predicted Functional Partners:
ycdT_2
Putative diguanylate cyclase YcdT.
  
  
 0.961
prkC_1
Serine/threonine-protein kinase PrkC.
 
 
 
 0.931
prkC_3
Serine/threonine-protein kinase PrkC.
 
 
 
 0.923
pknB
Serine/threonine-protein kinase PknB.
 
 
 
 0.901
pbpA
Penicillin-binding protein A.
 
   
 0.896
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 
   
 0.888
todS_6
Sensor histidine kinase TodS.
  
 
 0.866
prkC_2
Serine/threonine-protein kinase PrkC.
 
 
 
 0.736
spoVD_2
Stage V sporulation protein D.
   
 
 0.717
fliN
Flagellar motor switch protein FliN.
  
 
 0.695
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.