Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ptsG_2PTS system glucose-specific EIICBA component. (560 aa)    
Predicted Functional Partners:
crr_1
Glucose-specific phosphotransferase enzyme IIA component.
 0.999
crr_2
Glucose-specific phosphotransferase enzyme IIA component.
 0.999
ptsG_1
PTS system glucose-specific EIICBA component.
 
0.987
glcK
Glucokinase.
  
 0.982
ptsH
Phosphocarrier protein HPr.
 
 
 0.957
sacX
Negative regulator of SacY activity.
 
 
 0.941
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.932
bglF
PTS system beta-glucoside-specific EIIBCA component.
 
0.922
pgcA_1
Phosphoglucomutase.
     
 0.912
pgcA_2
Phosphoglucomutase.
     
 0.912
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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