STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfaCyclopropane-fatty-acyl-phospholipid synthase. (391 aa)    
Predicted Functional Partners:
mbtB_2
Phenyloxazoline synthase MbtB.
     
 0.762
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
 
 0.693
lgrD_2
Linear gramicidin synthase subunit D.
     
 0.688
AQS02313.1
Glycosyl transferases group 1.
  
  
 0.642
tycC
Tyrocidine synthase 3.
     
 0.628
srfAA
Surfactin synthase subunit 1.
     
 0.628
AQS02112.1
Flagellar protein FlaG.
   
   0.614
grsB_2
Gramicidin S synthase 2.
     
 0.535
AQS02538.1
Hypothetical protein.
       0.490
todS_6
Sensor histidine kinase TodS.
     
 0.462
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.