Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yxlF_11Putative ABC transporter ATP-binding protein YxlF. (306 aa)    
Predicted Functional Partners:
AQS02563.1
ABC-2 family transporter protein.
       0.773
AQS02562.1
ABC-2 family transporter protein.
       0.723
AQS02565.1
Iron-sulfur flavoprotein.
  
    0.674
apxIB
Toxin RTX-I translocation ATP-binding protein.
 
    
0.648
AQR98828.1
ABC-2 family transporter protein.
  
 
 0.630
nisC
Nisin biosynthesis protein NisC.
     
 0.593
AQS01732.1
ABC-2 family transporter protein.
  
 
 0.547
AQS01734.1
ABC-2 family transporter protein.
  
 
 0.547
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 
 0.471
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
   0.471
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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