STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS02565.1Iron-sulfur flavoprotein. (243 aa)    
Predicted Functional Partners:
sgcG_1
2-amino-4-deoxychorismate dehydrogenase.
 
     0.744
nisC
Nisin biosynthesis protein NisC.
       0.692
AQS00743.1
Iron-sulfur flavoprotein.
  
     0.680
yxlF_11
Putative ABC transporter ATP-binding protein YxlF.
  
    0.674
AQS02563.1
ABC-2 family transporter protein.
       0.671
AQS02562.1
ABC-2 family transporter protein.
       0.629
apxIB
Toxin RTX-I translocation ATP-binding protein.
       0.554
ndhI
NAD(P)H-quinone oxidoreductase subunit I.
 
     0.550
AQS01576.1
Ferredoxin.
 
  
 0.493
hydA
Periplasmic hydrogenase large subunit.
 
  
 0.486
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.