Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQS02568.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
AQS02570.1
Integrase core domain protein.
 
     0.782
AQR99606.1
Hypothetical protein.
 
     0.781
AQR98524.1
Integrase core domain protein.
  
     0.710
AQR98527.1
Integrase core domain protein.
 
     0.699
AQR99138.1
Integrase core domain protein.
 
     0.699
AQS00334.1
Integrase core domain protein.
 
     0.699
AQS00401.1
Integrase core domain protein.
 
     0.699
AQS00462.1
Integrase core domain protein.
 
     0.699
AQR99607.1
Hypothetical protein.
 
     0.434
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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