STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
norR2Nitric oxide reductase transcription regulator NorR2. (928 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor.
 
   
 0.704
licB_2
Lichenan-specific phosphotransferase enzyme IIB component.
  
     0.495
AQS02580.1
Hsp20/alpha crystallin family protein; Belongs to the small heat shock protein (HSP20) family.
       0.479
gmuA
Oligo-beta-mannoside-specific phosphotransferase enzyme IIA component.
  
     0.464
manX_6
PTS system mannose-specific EIIAB component.
       0.461
manX_5
PTS system mannose-specific EIIAB component.
       0.449
AQS00084.1
Putative histidine kinase sensor domain protein.
     
 0.435
licC
Lichenan permease IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
  
     0.421
barA_2
Signal transduction histidine-protein kinase BarA.
     
 0.415
lacF
Lactose-specific phosphotransferase enzyme IIA component.
  
     0.406
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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