STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glnB_2Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa)    
Predicted Functional Partners:
nrgA_1
Ammonium transporter NrgA.
 
 0.990
nrgA_3
Ammonium transporter NrgA.
 
 0.984
nrgA_2
Ammonium transporter NrgA.
 
 0.969
glnB_1
Nitrogen regulatory protein P-II 1.
  
  
 
0.912
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
 
 
 0.809
sunS_2
SPBc2 prophage-derived glycosyltransferase SunS.
    
 
 0.629
AQS00274.1
UvrD/REP helicase.
    
 
 0.619
AQR98479.1
Tetratricopeptide repeat protein.
    
 
 0.602
AQR99416.1
Tetratricopeptide repeat protein.
    
 
 0.602
bepA
Beta-barrel assembly-enhancing protease.
    
 
 0.602
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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