STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS02636.1Hypothetical protein. (80 aa)    
Predicted Functional Partners:
AQS02634.1
Hypothetical protein.
       0.825
ykuT
Putative MscS family protein YkuT.
       0.825
AQS02630.1
MazG-like family protein.
 
     0.815
AQR98334.1
Hypothetical protein.
  
     0.713
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.678
ssbA_2
Single-stranded DNA-binding protein A.
       0.668
AQR99416.1
Tetratricopeptide repeat protein.
 
     0.655
spoIIIAH
Stage III sporulation protein AH.
  
     0.646
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.643
AQR98485.1
Tetratricopeptide repeat protein.
  
     0.629
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.