STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ63625.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)    
Predicted Functional Partners:
AIQ64667.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
AIQ63626.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.961
AIQ64668.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.906
AIQ65974.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
    0.893
AIQ62108.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
    0.870
AIQ64118.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.848
AIQ64108.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.846
AIQ65949.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.845
AIQ62700.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.837
AIQ65158.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
    0.836
Your Current Organism:
Paenibacillus stellifer
NCBI taxonomy Id: 169760
Other names: CCUG 45566, DSM 14472, P. stellifer, Paenibacillus stellifer Suominen et al. 2003, strain IS 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.