STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001646945_02810Hypothetical protein. (256 aa)    
Predicted Functional Partners:
GCA_001646945_00457
Hypothetical protein.
   
    0.900
GCA_001646945_04918
Hypothetical protein.
   
    0.860
helD_1
DNA helicase IV.
  
    0.825
helD_2
DNA helicase IV.
  
    0.825
topA
DNA topoisomerase 1.
   
    0.800
GCA_001646945_03933
Hypothetical protein.
   
    0.800
GCA_001646945_00282
Hypothetical protein.
  
     0.625
dmsB_1
Anaerobic dimethyl sulfoxide reductase chain B.
   
    0.614
dmsB_2
Anaerobic dimethyl sulfoxide reductase chain B.
   
    0.614
psaC
Photosystem I iron-sulfur center.
   
    0.614
Your Current Organism:
Endozoicomonas ascidiicola
NCBI taxonomy Id: 1698521
Other names: DSM 100913, E. ascidiicola, Endozoicomonas ascidiicola Schreiber et al. 2016, Endozoicomonas sp. AVMART05, Endozoicomonas sp. KASP37, LMG 29095, LMG:29095, strain AVMART05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.