Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
lmo0548 | lmo0549 | gene:17593199 | gene:17593200 | Lmo0548 protein. | Similar to internalin protein. | 0.727 |
lmo0548 | lmo0550 | gene:17593199 | gene:17593201 | Lmo0548 protein. | Pepdidoglycan bound protein (LPXTG motif). | 0.626 |
lmo0548 | lmo0551 | gene:17593199 | gene:17593202 | Lmo0548 protein. | Lmo0551 protein. | 0.533 |
lmo0548 | lmo0689 | gene:17593199 | gene:17593340 | Lmo0548 protein. | Lmo0689 protein; Similar to CheA activity-modulating chemotaxis protein CheV. | 0.511 |
lmo0548 | lmo1734 | gene:17593199 | gene:17594416 | Lmo0548 protein. | Lmo1734 protein; Similar to glutamate synthase (large subunit). | 0.858 |
lmo0548 | nifJ | gene:17593199 | gene:17593480 | Lmo0548 protein. | NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase. | 0.799 |
lmo0548 | pykA | gene:17593199 | gene:17594227 | Lmo0548 protein. | Highly similar to pyruvate kinases. | 0.530 |
lmo0548 | rpoA | gene:17593199 | gene:17595324 | Lmo0548 protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.534 |
lmo0548 | rpoB | gene:17593199 | gene:17592909 | Lmo0548 protein. | RNA polymerase (beta subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.546 |
lmo0548 | rpoC | gene:17593199 | gene:17592910 | Lmo0548 protein. | RNA polymerase (beta' subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.506 |
lmo0549 | lmo0548 | gene:17593200 | gene:17593199 | Similar to internalin protein. | Lmo0548 protein. | 0.727 |
lmo0549 | lmo0550 | gene:17593200 | gene:17593201 | Similar to internalin protein. | Pepdidoglycan bound protein (LPXTG motif). | 0.697 |
lmo0549 | lmo0551 | gene:17593200 | gene:17593202 | Similar to internalin protein. | Lmo0551 protein. | 0.565 |
lmo0550 | lmo0548 | gene:17593201 | gene:17593199 | Pepdidoglycan bound protein (LPXTG motif). | Lmo0548 protein. | 0.626 |
lmo0550 | lmo0549 | gene:17593201 | gene:17593200 | Pepdidoglycan bound protein (LPXTG motif). | Similar to internalin protein. | 0.697 |
lmo0550 | lmo0551 | gene:17593201 | gene:17593202 | Pepdidoglycan bound protein (LPXTG motif). | Lmo0551 protein. | 0.647 |
lmo0551 | lmo0548 | gene:17593202 | gene:17593199 | Lmo0551 protein. | Lmo0548 protein. | 0.533 |
lmo0551 | lmo0549 | gene:17593202 | gene:17593200 | Lmo0551 protein. | Similar to internalin protein. | 0.565 |
lmo0551 | lmo0550 | gene:17593202 | gene:17593201 | Lmo0551 protein. | Pepdidoglycan bound protein (LPXTG motif). | 0.647 |
lmo0689 | lmo0548 | gene:17593340 | gene:17593199 | Lmo0689 protein; Similar to CheA activity-modulating chemotaxis protein CheV. | Lmo0548 protein. | 0.511 |
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