Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aroA | guaB | gene:17594257 | gene:17595475 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.523 |
aroA | lmo0614 | gene:17594257 | gene:17593264 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Lmo0614 protein. | 0.619 |
aroA | lmo1734 | gene:17594257 | gene:17594416 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Lmo1734 protein; Similar to glutamate synthase (large subunit). | 0.675 |
aroA | nifJ | gene:17594257 | gene:17593480 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase. | 0.848 |
guaB | aroA | gene:17595475 | gene:17594257 | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | 0.523 |
guaB | lmo0614 | gene:17595475 | gene:17593264 | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | Lmo0614 protein. | 0.448 |
guaB | lmo1734 | gene:17595475 | gene:17594416 | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | Lmo1734 protein; Similar to glutamate synthase (large subunit). | 0.950 |
guaB | nifJ | gene:17595475 | gene:17593480 | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase. | 0.727 |
lmo0612 | lmo0613 | gene:17593262 | gene:17593263 | Lmo0612 protein; Similar to transcription regulator MarR family. | Lmo0613 protein; Similar to oxidoreductase. | 0.917 |
lmo0612 | lmo0614 | gene:17593262 | gene:17593264 | Lmo0612 protein; Similar to transcription regulator MarR family. | Lmo0614 protein. | 0.543 |
lmo0613 | lmo0612 | gene:17593263 | gene:17593262 | Lmo0613 protein; Similar to oxidoreductase. | Lmo0612 protein; Similar to transcription regulator MarR family. | 0.917 |
lmo0613 | lmo0614 | gene:17593263 | gene:17593264 | Lmo0613 protein; Similar to oxidoreductase. | Lmo0614 protein. | 0.645 |
lmo0613 | lmo2084 | gene:17593263 | gene:17594769 | Lmo0613 protein; Similar to oxidoreductase. | Lmo2084 protein. | 0.476 |
lmo0613 | nifJ | gene:17593263 | gene:17593480 | Lmo0613 protein; Similar to oxidoreductase. | NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase. | 0.908 |
lmo0614 | aroA | gene:17593264 | gene:17594257 | Lmo0614 protein. | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | 0.619 |
lmo0614 | guaB | gene:17593264 | gene:17595475 | Lmo0614 protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.448 |
lmo0614 | lmo0612 | gene:17593264 | gene:17593262 | Lmo0614 protein. | Lmo0612 protein; Similar to transcription regulator MarR family. | 0.543 |
lmo0614 | lmo0613 | gene:17593264 | gene:17593263 | Lmo0614 protein. | Lmo0613 protein; Similar to oxidoreductase. | 0.645 |
lmo0614 | lmo1734 | gene:17593264 | gene:17594416 | Lmo0614 protein. | Lmo1734 protein; Similar to glutamate synthase (large subunit). | 0.684 |
lmo0614 | lmo2084 | gene:17593264 | gene:17594769 | Lmo0614 protein. | Lmo2084 protein. | 0.453 |
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