STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo0806Lmo0806 protein; Similar to transcription regulator. (180 aa)    
Predicted Functional Partners:
lmo0808
Lmo0808 protein; Similar to spermidine/putrescine ABC transporter,permease protein.
 
    0.847
lmo0807
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
    0.839
lmo0810
Lmo0810 protein; Similar to spermidine/putrescine-binding protein.
 
   
 0.836
lmo0809
Lmo0809 protein; Similar to spermidine/putrescine ABC transporter,permease protein.
 
     0.811
cinA
Similar to competence-damage inducible protein CinA; Belongs to the CinA family.
    
 0.681
nifJ
NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase.
  
 
 0.627
lmo0109
Lmo0109 protein; Similar to transcriptional regulatory proteins, AraC family.
 
 
 0.609
metS
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
     
 0.605
lmo0354
Lmo0354 protein; Similar to fatty-acid--CoA ligase.
  
 
 0.565
lmo2720
Lmo2720 protein; Similar to acetate-CoA ligase.
  
 
 0.565
Your Current Organism:
Listeria monocytogenes
NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.