STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo1008Lmo1008 protein; Similar to B. subtilis YkuJ protein. (77 aa)    
Predicted Functional Partners:
lmo2223
UPF0342 protein lmo2223; Similar to unknown proteins; Belongs to the UPF0342 family.
  
    0.790
lmo1612
Similar to unknown proteins.
  
    0.737
lmo2054
UPF0298 protein lmo2054; Similar to unknown proteins.
  
    0.666
lmo1009
Lmo1009 protein; Similar to B. subtilis YkuL protein.
 
     0.636
lmo1616
Similar to unknown proteins.
  
    0.582
lmo0217
Lmo0217 protein; Similar to B. subtilis DivIC protein.
  
     0.569
lmo1861
Lmo1861 protein; Similar to hypothetical proteins.
 
    0.526
lmo1978
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
   
    0.513
lmo1898
Lmo1898 protein; Similar to hypothetical proteins.
  
    0.487
lmo1011
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
  
    0.480
Your Current Organism:
Listeria monocytogenes
NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.