STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo1611Lmo1611 protein; Similar to aminopeptidase. (357 aa)    
Predicted Functional Partners:
lmo1610
Lmo1610 protein.
  
    0.854
lmo1609
Lmo1609 protein; Similar to thioredoxin.
  
    0.559
lmo1612
Similar to unknown proteins.
       0.527
lmo1608
UPF0354 protein lmo1608; Similar to unknown proteins; Belongs to the UPF0354 family.
  
    0.524
lmo1354
Lmo1354 protein; Similar to aminopeptidase P; Belongs to the peptidase M24B family.
 
  
 0.502
pheT-2
Similar phenylalanyl-tRNA synthetase (beta subunit); Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.492
lmo1036
Lmo1036 protein.
   
 
 0.430
lmo0033
Lmo0033 protein; Similar to endoglucanase.
     
 0.402
Your Current Organism:
Listeria monocytogenes
NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e
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