STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo1842Similar to unknown proteins. (274 aa)    
Predicted Functional Partners:
rsbT
RsbT protein; Highly similar to positive regulation of sigma-B activity.
 
 0.985
rsbX
Indirect negative regulation of sigma B dependant gene expression (serine phosphatase).
 
 0.974
rsbU
RsbU protein; Highly similar to serine phosphatase RsbU.
 
 0.924
rsbW
sigma-B activity negative regulator RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
  
 0.914
rsbS
RsbS protein; Highly similar to negative regulation of sigma-B activity.
  
   
 0.889
lmo0700
Lmo0700 protein; Similar to flagellar motor switch protein fliY.
  
   0.841
lmo0799
Blue-light photoreceptor; Exhibits the same spectroscopical features and blue-light induced photochemistry as plants phototropins, with the reversible formation of a blue-shifted photoproduct, assigned to an FMN-cysteine thiol adduct. Positive regulator in the activation of the general stress transcription factor sigma-B (By similarity).
 
  
0.771
lmo0714
Lmo0714 protein; Similar to flagellar motor switch protein fliG.
  
   0.752
lmo0689
Lmo0689 protein; Similar to CheA activity-modulating chemotaxis protein CheV.
  
 
 0.726
lmo0161
Lmo0161 protein.
  
   
0.636
Your Current Organism:
Listeria monocytogenes
NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.