STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo1922Similar to unknown proteins. (417 aa)    
Predicted Functional Partners:
lmo1921
UPF0302 protein lmo1921; Similar to unknown proteins; Belongs to the UPF0302 family.
 
    0.971
lmo1582
Lmo1582 protein; Weakly similar to site specific DNA-methyltransferase.
  
    0.777
lmo1510
Similar to unknown proteins.
 
 
 0.757
lmo1943
Similar to unknown proteins.
 
    0.745
lmo1857
UPF0346 protein lmo1857; Similar to hypoyhetical protein; Belongs to the UPF0346 family.
 
     0.740
lmo1861
Lmo1861 protein; Similar to hypothetical proteins.
 
    0.739
lmo1051
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
 
   0.725
lmo0927
Lmo0927 protein; Hypothetical transmembrane protein; Belongs to the LTA synthase family.
 
    0.724
lmo2214
Lmo2214 protein; Similar to ABC transporter (membrane protein).
  
    0.722
aroE
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
  
    0.712
Your Current Organism:
Listeria monocytogenes
NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.