STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo2370Lmo2370 protein; Similar to aminotransferase. (388 aa)    
Predicted Functional Partners:
lmo1680
Lmo1680 protein; Similar to cystathionine gamma-synthase.
 
 
 0.947
lmo1679
Lmo1679 protein; Similar to cystathionine beta-lyase.
 
 
 0.945
lmo1678
Lmo1678 protein; Similar to 5-methyltetrahydrofolate-homocysteine methyltransferase (metH).
    
 0.936
cysK
Highly similar to cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.930
lmo0595
Lmo0595 protein; Similar to O-acetylhomoserine sulfhydrylase.
   
 0.922
ilvA
L-threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
 
  
  0.915
lmo0845
Lmo0845 protein; Similar to B. subtilis YxjH and YxjG proteins.
 
  
 0.910
aspB
Aminotransferase; Similar to aspartate aminotransferases.
 
  
0.910
hom
Highly similar to homoserine dehydrogenase.
    
 0.902
lmo1681
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
    
 0.898
Your Current Organism:
Listeria monocytogenes
NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e
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