STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo2517Lmo2517 protein. (201 aa)    
Predicted Functional Partners:
lmo2516
Lmo2516 protein; Similar to conserved hypothetical proteins.
  
    0.809
nifJ
NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase.
    
 0.804
lmo1734
Lmo1734 protein; Similar to glutamate synthase (large subunit).
   
 
 0.684
lmo1698
Similar to ribosomal-protein-alanine N-acetyltransferase.
  
     0.629
aroA
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase.
    
  0.619
lmo1982
Similar to unknown proteins.
  
     0.603
lmo2400
Lmo2400 protein; Similar to acetyltransferase.
  
  
  0.584
rncS
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.541
lmo2084
Lmo2084 protein.
  
 
   0.521
lmo1585
Lmo1585 protein; Similar to proteases.
   
    0.495
Your Current Organism:
Listeria monocytogenes
NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.