Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aroA | aroF | gene:17594257 | gene:17594613 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.999 |
| aroA | lmo2749 | gene:17594257 | gene:17595466 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Lmo2749 protein; Similar to glutamine amidotransferase. | 0.949 |
| aroA | lmo2750 | gene:17594257 | gene:17595467 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Lmo2750 protein; Similar to para-aminobenzoate synthase component I. | 0.959 |
| aroA | trpA | gene:17594257 | gene:17594284 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.571 |
| aroA | trpB | gene:17594257 | gene:17594285 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.487 |
| aroA | trpC | gene:17594257 | gene:17594287 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Highly similar to indol-3-glycerol phosphate synthases; Belongs to the TrpC family. | 0.767 |
| aroA | trpD | gene:17594257 | gene:17594288 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.913 |
| aroA | trpF | gene:17594257 | gene:17594286 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Phosphoribosyl anthranilate isomerase; Belongs to the TrpF family. | 0.745 |
| aroA | trpG | gene:17594257 | gene:17594289 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | TrpG protein; Highly similar to anthranilate synthase beta subunit. | 0.950 |
| aroF | aroA | gene:17594613 | gene:17594257 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | 0.999 |
| aroF | lmo2749 | gene:17594613 | gene:17595466 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Lmo2749 protein; Similar to glutamine amidotransferase. | 0.931 |
| aroF | lmo2750 | gene:17594613 | gene:17595467 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Lmo2750 protein; Similar to para-aminobenzoate synthase component I. | 0.975 |
| aroF | trpA | gene:17594613 | gene:17594284 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.852 |
| aroF | trpB | gene:17594613 | gene:17594285 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.786 |
| aroF | trpC | gene:17594613 | gene:17594287 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Highly similar to indol-3-glycerol phosphate synthases; Belongs to the TrpC family. | 0.781 |
| aroF | trpD | gene:17594613 | gene:17594288 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.864 |
| aroF | trpF | gene:17594613 | gene:17594286 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Phosphoribosyl anthranilate isomerase; Belongs to the TrpF family. | 0.652 |
| aroF | trpG | gene:17594613 | gene:17594289 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | TrpG protein; Highly similar to anthranilate synthase beta subunit. | 0.934 |
| lmo2749 | aroA | gene:17595466 | gene:17594257 | Lmo2749 protein; Similar to glutamine amidotransferase. | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | 0.949 |
| lmo2749 | aroF | gene:17595466 | gene:17594613 | Lmo2749 protein; Similar to glutamine amidotransferase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.931 |
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