Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ffh | lmo1802 | gene:17594486 | gene:17594487 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | UPF0122 protein lmo1802; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.969 |
| ffh | lmo1803 | gene:17594486 | gene:17594488 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.996 |
| ffh | lmo1822 | gene:17594486 | gene:17594507 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Lmo1822 protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.512 |
| lmo0240 | lmo1453 | gene:17592891 | gene:17594110 | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | Lmo1453 protein. | 0.548 |
| lmo0240 | lmo1503 | gene:17592891 | gene:17594160 | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | UPF0297 protein lmo1503; Belongs to the UPF0297 family. | 0.647 |
| lmo0240 | lmo1802 | gene:17592891 | gene:17594487 | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | UPF0122 protein lmo1802; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.618 |
| lmo0240 | lmo1822 | gene:17592891 | gene:17594507 | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | Lmo1822 protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.449 |
| lmo0240 | lmo1829 | gene:17592891 | gene:17594514 | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | Lmo1829 protein; Similar to fibronectin binding proteins. | 0.747 |
| lmo0240 | lmo2472 | gene:17592891 | gene:17595183 | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | Probable cell division protein WhiA; Involved in cell division and chromosome segregation. | 0.537 |
| lmo1358 | lmo1503 | gene:17594015 | gene:17594160 | Lmo1358 protein; Similar to B. subtilis YqhY protein. | UPF0297 protein lmo1503; Belongs to the UPF0297 family. | 0.477 |
| lmo1358 | lmo1802 | gene:17594015 | gene:17594487 | Lmo1358 protein; Similar to B. subtilis YqhY protein. | UPF0122 protein lmo1802; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.622 |
| lmo1358 | lmo2472 | gene:17594015 | gene:17595183 | Lmo1358 protein; Similar to B. subtilis YqhY protein. | Probable cell division protein WhiA; Involved in cell division and chromosome segregation. | 0.593 |
| lmo1453 | lmo0240 | gene:17594110 | gene:17592891 | Lmo1453 protein. | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.548 |
| lmo1453 | lmo1503 | gene:17594110 | gene:17594160 | Lmo1453 protein. | UPF0297 protein lmo1503; Belongs to the UPF0297 family. | 0.700 |
| lmo1453 | lmo1802 | gene:17594110 | gene:17594487 | Lmo1453 protein. | UPF0122 protein lmo1802; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.746 |
| lmo1453 | lmo1829 | gene:17594110 | gene:17594514 | Lmo1453 protein. | Lmo1829 protein; Similar to fibronectin binding proteins. | 0.576 |
| lmo1453 | lmo2472 | gene:17594110 | gene:17595183 | Lmo1453 protein. | Probable cell division protein WhiA; Involved in cell division and chromosome segregation. | 0.628 |
| lmo1503 | lmo0240 | gene:17594160 | gene:17592891 | UPF0297 protein lmo1503; Belongs to the UPF0297 family. | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.647 |
| lmo1503 | lmo1358 | gene:17594160 | gene:17594015 | UPF0297 protein lmo1503; Belongs to the UPF0297 family. | Lmo1358 protein; Similar to B. subtilis YqhY protein. | 0.477 |
| lmo1503 | lmo1453 | gene:17594160 | gene:17594110 | UPF0297 protein lmo1503; Belongs to the UPF0297 family. | Lmo1453 protein. | 0.700 |
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