STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpsA1_2Thermostable carboxypeptidase 1; Belongs to the peptidase M20A family. (411 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase.
    
 0.808
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.594
AOA65_1863
ThiS family protein.
       0.551
pepQ_2
Xaa-Pro dipeptidase.
  
  
 0.542
mptN
Tetrahydromethanopterin:alpha-L-glutamate ligase.
  
    0.508
pepQ_1
Xaa-Pro dipeptidase.
  
  
 0.446
AOA65_1497
Rhomboid family protein.
  
  
 0.426
AOA65_0205
Bacterial extracellular solute-binding protein, family 5 Middle.
   
 
 0.406
AOA65_0614
Bacterial extracellular solute-binding protein, family 5 Middle.
   
 
 0.406
AOA65_0983
Bacterial extracellular solute-binding protein, family 5 Middle.
   
 
 0.406
Your Current Organism:
Bathyarchaeota archaeon BA1
NCBI taxonomy Id: 1700835
Other names: C. Bathyarchaeota archaeon BA1, Candidatus Bathyarchaeota archaeon BA1
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