STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
fniIsopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (371 aa)    
Predicted Functional Partners:
idsA
Short chain isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.997
AOA65_2113
Isopentenyl phosphate kinase.
    
 0.987
AOA65_1761
Methylmalonate-semialdehyde dehydrogenase; Similarity search against UniProtKB Archaea.
  
 
 0.917
rpl4
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
  
 0.908
AOA65_0540
Glycolate oxidase subunit GlcD.
  
 
 0.887
AOA65_0554
Glycolate oxidase subunit GlcD.
  
 
 0.887
AOA65_2238
Glycolate oxidase subunit GlcD.
  
 
 0.887
AOA65_1170
Hypothetical protein.
 
 
 0.878
AOA65_2206
Methylmalonyl-CoA epimerase; Similarity search against UniProtKB Archaea.
  
 
 0.865
mvk
Mevalonate kinase; Catalyzes the phosphorylation of (R)-mevalonate (MVA) to (R)- mevalonate 5-phosphate (MVAP). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoid compounds such as archaeal membrane lipids; Belongs to the GHMP kinase family. Mevalonate kinase subfamily.
 
 
 0.855
Your Current Organism:
Bathyarchaeota archaeon BA1
NCBI taxonomy Id: 1700835
Other names: C. Bathyarchaeota archaeon BA1, Candidatus Bathyarchaeota archaeon BA1
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