STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCIntegrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (296 aa)    
Predicted Functional Partners:
KQM08358.1
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.633
KQM08074.1
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.603
KQM08719.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.549
KQM08371.1
Phosphate butyryltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.522
KQM08965.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.510
recR
Hypothetical protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.426
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.406
polA
Hypothetical protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.402
Your Current Organism:
Bacteroides periocalifornicus
NCBI taxonomy Id: 1702214
Other names: Bacteroides sp. 128, Bacteroidetes bacterium 12B, C. [Bacteroides] periocalifornicus, Candidatus Bacteroides periocalifornicus, Candidatus [Bacteroides] periocalifornicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.