STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnfAElectron transporter RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (190 aa)    
Predicted Functional Partners:
rnfD
Na+-transporting NADH:ubiquinone oxidoreductase subunit D; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
 
 0.995
rnfC
Electron transporter RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
 0.993
rnfG
Hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
 0.992
rnfE
Electron transporter RsxE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
0.991
rnfB
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
 0.986
KQM08358.1
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.890
nqrD
Na(+)-translocating NADH-quinone reductase subunit D; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family.
 
   
 0.751
KQM09171.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.708
KQM08748.1
Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome ubiquinol oxidase subunit 1 family.
     
 0.683
KQM09637.1
Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
    
 0.654
Your Current Organism:
Bacteroides periocalifornicus
NCBI taxonomy Id: 1702214
Other names: Bacteroides sp. 128, Bacteroidetes bacterium 12B, C. [Bacteroides] periocalifornicus, Candidatus Bacteroides periocalifornicus, Candidatus [Bacteroides] periocalifornicus
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