STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK53160.1Hypothetical protein; 'Pfam: Uncharacterised ACR, COG2135'; Belongs to the SOS response-associated peptidase family. (191 aa)    
Predicted Functional Partners:
AMK53159.1
YggS family pyridoxal phosphate enzyme; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
    0.727
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.589
AMK53162.1
Hypothetical protein; 'Pfam: DNA polymerase III, delta subunit'.
       0.498
AMK53163.1
Hypothetical protein; Pfam: PSP1 C-terminal conserved region.
       0.498
rsmI
Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.498
AMK54399.1
Hypothetical protein; 'Pfam: Phage integrase family; Pfam: Phage integrase, N-terminal SAM-like domain'; Belongs to the 'phage' integrase family.
   
  
 0.443
AMK54672.1
Hypothetical protein; 'Pfam: Phage integrase family; Pfam: AP2-like DNA-binding integrase domain; Pfam: Phage integrase, N-terminal SAM-like domain'; Belongs to the 'phage' integrase family.
   
  
 0.443
AMK55069.1
Hypothetical protein; Pfam: Phage integrase family; Belongs to the 'phage' integrase family.
   
  
 0.443
AMK55110.1
'Pfam: Phage integrase, N-terminal SAM-like domain; Pfam: Phage integrase family'; Belongs to the 'phage' integrase family.
   
  
 0.443
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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