STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK53184.1Hypothetical protein; Pfam: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (219 aa)    
Predicted Functional Partners:
AMK54116.1
Pfam: Cytidylyltransferase family; Belongs to the CDS family.
    
 0.917
AMK55022.1
TIGRFAM: pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Pfam: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
  0.913
AMK55021.1
Pfam: Competence-damaged protein; TIGRFAM: cinA_cterm: competence/damage-inducible protein CinA C-terminal domain; Belongs to the CinA family.
  
  
 0.796
AMK55023.1
Hypothetical protein; Pfam: Helix-turn-helix domain.
  
    0.590
AMK55480.1
Hypothetical protein; Pfam: MarR family; PRINTS: Bacterial regulatory protein MarR family signature; SMART: helix_turn_helix multiple antibiotic resistance protein.
 
   
 0.536
AMK53364.1
Hypothetical protein; Pfam: FtsX-like permease family.
 
   
 0.520
msrB
Pfam: SelR domain; TIGRFAM: TIGR00357: methionine-R-sulfoxide reductase.
     
 0.515
folD
5,10-methylene-tetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
  
 0.500
AMK53675.1
Pfam: Phage protein Gp37/Gp68.
  
   
 0.489
AMK54206.1
Hypothetical protein.
  
     0.483
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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