STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK53229.1Pfam: SseB protein N-terminal domain; Pfam: SseB protein C-terminal domain. (280 aa)    
Predicted Functional Partners:
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.832
htpG
Hypothetical protein; Molecular chaperone. Has ATPase activity.
  
 0.820
dnaK
Chaperone dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.789
AMK54521.1
Hypothetical protein; PRINTS: Ankyrin repeat signature; Pfam: Ankyrin repeat; SMART: ankyrin repeats; Pfam: Ankyrin repeats (3 copies).
  
 0.788
AMK53924.1
Ammonium transporter; Pfam: Nitrogen regulatory protein P-II; Pfam: Ammonium Transporter Family; PRINTS: P-II protein signature; SMART: Nitrogen regulatory protein P-II; TIGRFAM: amt: ammonium transporter; Belongs to the P(II) protein family.
    
 
 0.750
AMK55812.1
Pfam: Crp-like helix-turn-helix domain; Pfam: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-monophosphate binding domain.
   
 0.706
AMK53709.1
Cellulase.
  
 
 0.688
AMK53857.1
Cellulose synthase (UDP-forming); Pfam: Glycosyltransferase like family 2; PRINTS: Cellulose synthase subunit A signature.
  
 
 0.688
AMK53232.1
Hypothetical protein; 'Pfam: Macro domain; SMART: Appr-1''-p processing enzyme'.
  
  0.677
AMK53230.1
CCA tRNA nucleotidyltransferase; Pfam: HD domain; Pfam: Poly A polymerase head domain; Pfam: Probable RNA and SrmB- binding site of polymerase A; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.646
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.