STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK53232.1Hypothetical protein; 'Pfam: Macro domain; SMART: Appr-1''-p processing enzyme'. (173 aa)    
Predicted Functional Partners:
AMK53230.1
CCA tRNA nucleotidyltransferase; Pfam: HD domain; Pfam: Poly A polymerase head domain; Pfam: Probable RNA and SrmB- binding site of polymerase A; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.782
AMK53231.1
Hypothetical protein; Pfam: RmuC family.
       0.782
AMK53233.1
Hypothetical protein; Pfam: Putative rRNA methylase.
       0.773
AMK53229.1
Pfam: SseB protein N-terminal domain; Pfam: SseB protein C-terminal domain.
  
  0.677
AMK53236.1
Hypothetical protein.
       0.491
AMK53235.1
Pfam: Glucose-6-phosphate isomerase (GPI).
       0.490
AMK53227.1
Microcin-processing peptidase 2; Pfam: Putative modulator of DNA gyrase; Unknown type peptidase. MEROPS family U62.
       0.489
AMK53228.1
Putative Zn-dependent protease; Pfam: Putative modulator of DNA gyrase.
       0.489
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.