STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK53401.1Hypothetical protein; Pfam: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (335 aa)    
Predicted Functional Partners:
AMK53400.1
Pfam: Periplasmic binding protein.
 
 
 0.984
AMK53403.1
Ferrichrome ABC transporter ATP-binding component; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
     0.974
AMK53481.1
Hypothetical protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
 
 0.972
AMK53402.1
Hypothetical protein; Pfam: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
0.856
AMK53483.1
Iron ABC transporter substrate-binding protein; Pfam: Periplasmic binding protein.
 
 
 0.847
AMK53404.1
Hypothetical protein.
       0.594
AMK53399.1
Hypothetical protein.
       0.532
AMK53482.1
Hypothetical protein; Pfam: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
0.532
AMK53406.1
Histidine kinase; 'PRINTS: Bacterial sensor protein C-terminal signature; SMART: His Kinase A (phosphoacceptor) domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Histidine kinase-like ATPases; Pfam: His Kinase A (phospho-acceptor) domain'.
  
    0.456
AMK53405.1
Hypothetical protein; 'Pfam: Transcriptional regulatory protein, C terminal; SMART: cheY-homologous receiver domain; SMART: Transcriptional regulatory protein, C terminal; Pfam: Response regulator receiver domain'.
       0.441
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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