STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK53518.1SMART: ATPases associated with a variety of cellular activities; Pfam: Phosphoribulokinase / Uridine kinase family. (526 aa)    
Predicted Functional Partners:
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 0.960
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
 
 0.921
cmk
Pfam: Cytidylate kinase; TIGRFAM: cmk: cytidylate kinase.
   
 
 0.920
AMK53264.1
Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family.
    
 0.918
AMK53263.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.917
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
  
 0.917
AMK54538.1
'SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; PRINTS: Glyceraldehyde-3-phosphate dehydrogenase signature; Pfam: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Pfam: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; TIGRFAM: GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I'; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.714
msrA
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
      0.670
AMK53530.1
'Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain'.
   
  0.544
AMK53864.1
Hypothetical protein; 'Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain'.
   
  0.544
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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