STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK53641.1Hypothetical protein; Pfam: ACT domain; Pfam: CBS domain; SMART: Domain in cystathionine beta-synthase and other proteins. (224 aa)    
Predicted Functional Partners:
AMK54487.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; 'Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; SMART: Domain of unknown function; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam: Domain of unknown function; TIGRFAM: pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; Pfam: 4Fe-4S dicluster domain'.
   
   0.704
AMK53642.1
Hypothetical protein.
       0.636
AMK53640.1
Hypothetical protein; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities.
 
    0.635
AMK53637.1
Hypothetical protein; Pfam: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.634
AMK53638.1
Hypothetical protein; Pfam: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.632
AMK53639.1
Hypothetical protein; Pfam: ABC transporter; Pfam: Branched-chain amino acid ATP-binding cassette transporter; SMART: ATPases associated with a variety of cellular activities.
 
    0.627
AMK55178.1
'TIGRFAM: dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; Pfam: NAD dependent epimerase/dehydratase family'; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.588
AMK53636.1
Pfam: Periplasmic binding protein.
 
     0.576
AMK55378.1
Hypothetical protein; Pfam: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.544
guaA
GMP synthase (glutamine-hydrolyzing) domain-containing protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.533
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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