STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK54256.1Hypothetical protein; Pfam: Prokaryotic N-terminal methylation motif; TIGRFAM: IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain. (109 aa)    
Predicted Functional Partners:
AMK54255.1
Hypothetical protein.
  
  
 0.923
AMK54254.1
Hypothetical protein; SMART: ATPases associated with a variety of cellular activities; Pfam: Type II/IV secretion system protein.
  
  
 0.913
AMK54257.1
Hypothetical protein; TIGRFAM: IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain.
       0.797
AMK54259.1
Hypothetical protein.
       0.774
AMK54258.1
Hypothetical protein.
       0.773
AMK54260.1
Hypothetical protein.
       0.741
AMK54017.1
Pfam: YbbR-like protein.
  
     0.699
AMK54177.1
Pfam: Uncharacterised protein family (UPF0154).
  
     0.691
AMK54528.1
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.687
AMK53966.1
Hypothetical protein; Pfam: Replication initiation and membrane attachment.
  
     0.673
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.