STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK54334.1Hypothetical protein; Pfam: N-acetylmuramoyl-L-alanine amidase. (240 aa)    
Predicted Functional Partners:
AMK55896.1
Hypothetical protein; Pfam: N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.926
AMK54333.1
Hypothetical protein; Pfam: NUDIX domain.
       0.632
AMK55553.1
Hypothetical protein; Pfam: Rhomboid family.
  
   0.568
AMK54330.1
Hypothetical protein; Pfam: Calcineurin-like phosphoesterase.
 
     0.550
scpA
Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.546
AMK54336.1
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.545
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
 
   
 0.529
AMK54332.1
Hypothetical protein; Pfam: ATP-grasp domain.
       0.518
AMK55669.1
beta-L-N-acetylhexosaminidase; 'Pfam: Glycosyl hydrolase family 20, catalytic domain; PRINTS: Glycosyl hydrolase family 20 signature'.
    
 0.503
AMK54331.1
Pfam: Putative esterase.
       0.487
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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